Peer-reviewed work, grouped by what it was about.

Multi-omics analysis

• Recognition of diverse GATA motifs necessitates multimodal GATA3-DNA binding

  Gharui, S., Puntambekar, S., Sarkar, R. R., Narlikar, L., & Sengupta, D.

  Biochemical and Biophysical Research Communications · 2026 · 817, 153718
  Co-author

• Pan-cancer analysis of transcripts encoding novel open reading frames (nORFs) and their potential biological functions

  Erady, C.*, Boxall, A.*, Puntambekar, S.*, Jagannathan, N. S.*, Chauhan, R.*, et al., & Prabakaran, S. (* contributed equally)

  NPJ Genomic Medicine · 2021 · 6(1), 4
  Co-first author

Comparative genomics

• Evolutionary divergence of novel open reading frames in cichlids speciation

  Puntambekar, S., Newhouse, R., San-Miguel, J., Chauhan, R., Vernaz, G., et al., & Prabakaran, S.

  Scientific Reports · 2020 · 10(1), 21570
  First author

Systems biology & modelling

• Method for identification of sensitive nodes in Boolean models of biological networks

  Dnyane, P. A., Puntambekar, S. S., & Gadgil, C. J.

  IET Systems Biology · 2018 · 12(1), 1–6
  Co-author

• Identification of unintuitive features of sumoylation through mathematical modeling

  Puntambekar, S. S., Nyayanit, D., Saxena, P., & Gadgil, C. J.

  Journal of Biological Chemistry · 2016 · 291(18), 9458–9468
  First author

• IFN-γ signaling maintains skin pigmentation homeostasis through regulation of melanosome maturation

  Natarajan, V. T., Ganju, P., Singh, A., Vijayan, V., Kirty, K., Yadav, S., Puntambekar, S., et al., & Gokhale, R. S.

  PNAS · 2014 · 111(6), 2301–2306
  Co-author