Most of my pharma R&D and pipeline-engineering work lives inside client engagements under NDA and isn't public. What's below is primarily companion code to published research, teaching material, and analysis utilities. Full profile at github.com/shraddhapuntambekar.
Course material I authored for the Systems Biology module of the M.Sc. Bioinformatics program at Savitribai Phule Pune University (March 2026). Covers Boolean network reconstruction, dynamic simulation, attractor and steady-state analysis, and sensitivity analysis, with hands-on exercises and example notebooks.
Companion code to my first-author Scientific Reports (2020) paper on cichlid speciation. Implements phyloP-based evolutionary rate analysis to identify accelerated regions in the cichlid genome.
Companion code to my first-author Journal of Biological Chemistry (2016) paper. Contains the ODE-based mathematical model of the sumoylation post-translational modification system, including model files, parameter sets, and scripts for steady-state and sensitivity analyses.
Shell scripts and analysis notes for bulk RNA-seq workflows (in progress; documentation being expanded).
Utility scripts to map phyloP / phastCons conservation scores onto user-defined regions of interest.
Analysis scripts for ChIP-seq, ATAC-seq, and RNA-seq work supporting the BBRC (2026) GATA3 paper.
Source for this website (plain static HTML/CSS, no framework).
If any of this aligns with what you're hiring for or building, get in touch.